Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 9 curated entries in PaperBLAST's database that match ''.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1697: aminotransferase AlaT (RefSeq)
is similar to:

AAPAT_RHIME / Q02635: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC; EC from Rhizobium meliloti
Q02635: aspartate transaminase (EC; glutamate-prephenate aminotransferase (EC from Sinorhizobium meliloti

28% id,
94% cov

AAPAT_RHOS1 / A3PMF8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC; EC from Rhodobacter sphaeroides

28% id,
94% cov

PAT_PETHY / E9L7A5: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; PhPPA-AT; EC; EC; EC from Petunia hybrida

28% id,
78% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory