Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 101 curated entries in PaperBLAST's database that match '2.7.1.13'.

These curated entries have 72 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1338: tetraacyldisaccharide 4'-kinase (RefSeq)
is similar to:
PaperBLAST

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC 2.7.1.130 from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli

47% id,
100% cov

O67572: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Aquifex aeolicus

37% id,
53% cov

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana

35% id,
44% cov

Sama_2024: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

Q5QJG2: macrolide 2'-kinase (EC 2.7.1.136) from Salmonella enterica
Q5W3B4: macrolide 2'-kinase (EC 2.7.1.136) from uncultured bacterium
Q47396: macrolide 2'-kinase (EC 2.7.1.136) from Escherichia coli

22% id,
80% cov

Sama_3518: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

30% id,
40% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

33% id,
18% cov

Sama_0454: MSHA biogenesis protein MshL (RefSeq)
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum

60% id,
2% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1328250-1331480 (frame +3) on 248323
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum
Also see hits to annotated proteins above

24% id,
31% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory