Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0291: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
98% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

30% id,
88% cov

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

25% id,
99% cov

More...

Sama_3518: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

25% id,
99% cov

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

26% id,
77% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

25% id,
52% cov

More...

Sama_0561: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

RBSK_STAAC / A0A0H2WZY4: Ribokinase; RK; EC 2.7.1.15 from Staphylococcus aureus
A0A0H2WZY4: ribokinase (EC 2.7.1.15) from Staphylococcus aureus

25% id,
99% cov

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

27% id,
88% cov

BT2804: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

26% id,
86% cov

More...

Sama_2736: ribose-5-phosphate isomerase A (RefSeq)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

35% id,
42% cov

Sama_0731: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq)
is similar to:
PaperBLAST

RBSK_HUMAN / Q9H477: Ribokinase; RK; EC 2.7.1.15 from Homo sapiens
Q9H477: ribokinase (EC 2.7.1.15) from Homo sapiens

32% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory