Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0291: carbohydrate kinase (RefSeq)
is similar to:

KDGK1_HALVD / D4GSE6: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxygluconate/2-keto-3-deoxygalactonate kinase; KDG kinase; KDGK-1; EC from Haloferax volcanii
D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC; 2-dehydro-3-deoxygluconokinase (EC from Haloferax volcanii

24% id,
100% cov

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC from Dickeya dadantii

26% id,
87% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC; EC from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC from Escherichia coli

23% id,
87% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory