Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 36 curated entries in PaperBLAST's database that match '2.7.1.30'.

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0341: glycerol kinase (RefSeq)
is similar to:
PaperBLAST

GLPK_ECOLI / P0A6F3: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Escherichia coli
GlpK / b3926: glycerol kinase (EC 2.7.1.30) from Escherichia coli
glpK: glycerol kinase; EC 2.7.1.30 from Escherichia coli
glpK / P0A6F3: glycerol kinase (EC 2.7.1.30) from Escherichia coli

69% id,
98% cov

A6TFR2: glycerol kinase (EC 2.7.1.30) from Klebsiella pneumoniae

69% id,
98% cov

PS417_05575: Glycerol kinase (EC 2.7.1.30) from Pseudomonas simiae

68% id,
97% cov

More...

Sama_1976: carbohydrate kinase, FGGY (RefSeq)
is similar to:
PaperBLAST

PS417_05575: Glycerol kinase (EC 2.7.1.30) from Pseudomonas simiae

25% id,
98% cov

Dshi_3420: Glycerol kinase (EC 2.7.1.30) from Dinoroseobacter shibae

26% id,
92% cov

GLPK_THEKO / O93623: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Thermococcus kodakarensis
O93623: glycerol kinase (EC 2.7.1.30) from Thermococcus kodakarensis

25% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory