Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 171 curated entries in PaperBLAST's database that match '2.7.1.4'.

These curated entries have 131 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0561: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

Sama_0561: Fructokinase (EC 2.7.1.4) from Shewanella amazonensis

100% id,
100% cov

N515DRAFT_1919: Fructokinase (EC 2.7.1.4) from Dyella japonica

45% id,
99% cov

Shewana3_0069: Fructokinase (EC 2.7.1.4) from Shewanella sp.

37% id,
99% cov

More...

Sama_2047: uridine kinase (RefSeq)
is similar to:
PaperBLAST

Udk / b2066: uridine/cytidine kinase (EC 2.7.1.48; EC 2.7.1.213) from Escherichia coli
udk / P0A8F4: uridine/cytidine kinase (EC 2.7.1.48) from Escherichia coli

73% id,
98% cov

URK_STRP6 / Q5XBI8: Uridine kinase; Cytidine monophosphokinase; Uridine monophosphokinase; EC 2.7.1.48 from Streptococcus pyogenes

48% id,
97% cov

Q5SKR5: uridine kinase (EC 2.7.1.48) from Thermus thermophilus

47% id,
98% cov

More...

Sama_1814: pyruvate kinase (RefSeq)
is similar to:
PaperBLAST

PykA / b1854: pyruvate kinase II (EC 2.7.1.40) from Escherichia coli
pykA / P21599: pyruvate kinase II (EC 2.7.1.40) from Escherichia coli

72% id,
99% cov

KPYK2_SALTY / Q8ZNW0: Pyruvate kinase II; PK-2; EC 2.7.1.40 from Salmonella typhimurium

72% id,
99% cov

KPYK_MYCTU / P9WKE5: Pyruvate kinase; PK; EC 2.7.1.40 from Mycobacterium tuberculosis

39% id,
98% cov

More...

Sama_2231: fructokinase (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

60% id,
100% cov

Sama_1405: fructokinase (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

59% id,
100% cov

Sama_0291: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

Sama_0561: Fructokinase (EC 2.7.1.4) from Shewanella amazonensis

52% id,
96% cov

N515DRAFT_1919: Fructokinase (EC 2.7.1.4) from Dyella japonica

43% id,
97% cov

Shewana3_0069: Fructokinase (EC 2.7.1.4) from Shewanella sp.

39% id,
100% cov

More...

Sama_1859: phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase (RefSeq)
is similar to:
PaperBLAST

THID_SALTY / P55882: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Salmonella typhimurium
P55882: hydroxymethylpyrimidine kinase (EC 2.7.1.49) from Salmonella enterica

36% id,
97% cov

THID_ECOLI / P76422: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Escherichia coli
ThiJ / b2103: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.7.4.7) from Escherichia coli
thiD / P76422: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.7.4.7) from Escherichia coli
P76422: hydroxymethylpyrimidine kinase (EC 2.7.1.49) from Escherichia coli

36% id,
97% cov

THID_BACSU / O31620: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Bacillus subtilis
thiD / O31620: 4-amino-2-methyl-5-phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.7.4.7) from Bacillus subtilis

36% id,
92% cov

More...

Sama_1197: putative ROK-family protein (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

33% id,
99% cov

Ga0059261_1776: Fructokinase (EC 2.7.1.4) from Sphingomonas koreensis

26% id,
85% cov

Sama_3518: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

cscK / GB|CAA57218.2: fructokinase; EC 2.7.1.4 from Escherichia coli

24% id,
91% cov

scrK / GB|AAA08602.1: fructokinase; EC 2.7.1.4 from Salmonella enterica

24% id,
87% cov

Dshi_2797: Fructokinase (EC 2.7.1.4) from Dinoroseobacter shibae

32% id,
35% cov

More...

Sama_0536: galactokinase (RefSeq)
is similar to:
PaperBLAST

GALAK_ARATH / Q8VYG2: Galacturonokinase; D-galacturonic acid-1-P kinase; EC 2.7.1.44 from Arabidopsis thaliana

25% id,
86% cov

ARAK_ARATH / O23461: L-arabinokinase; AtISA1; EC 2.7.1.46 from Arabidopsis thaliana
ARA1 / O23461: arabinose kinase (EC 2.7.1.46) from Arabidopsis thaliana

33% id,
11% cov

Sama_2096: uracil phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

UKL2_ARATH / Q9LK34: Uridine kinase-like protein 2, chloroplastic; EC 2.7.1.48; EC 2.4.2.9 from Arabidopsis thaliana

34% id,
41% cov

UKL1_ARATH / Q9FKS0: Uridine kinase-like protein 1, chloroplastic; EC 2.7.1.48; EC 2.4.2.9 from Arabidopsis thaliana
Q9FKS0: uracil phosphoribosyltransferase (EC 2.4.2.9); uridine kinase (EC 2.7.1.48) from Arabidopsis thaliana

34% id,
41% cov

UKL3_ARATH / Q8VYB2: Uridine kinase-like protein 3; EC 2.7.1.48; EC 2.4.2.9 from Arabidopsis thaliana

35% id,
30% cov

More...

Sama_2072: phosphoenolpyruvate synthase (RefSeq)
is similar to:
PaperBLAST

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

26% id,
50% cov

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

26% id,
40% cov

Q6GG09: pyruvate kinase (EC 2.7.1.40) from Staphylococcus aureus

29% id,
23% cov

Sama_0864: phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq)
is similar to:
PaperBLAST

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

22% id,
42% cov

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

35% id,
15% cov

P51182: pyruvate kinase (EC 2.7.1.40) from Sporosarcina psychrophila

36% id,
12% cov

More...

Sama_1650: phosphotransferase system, enzyme I (RefSeq)
is similar to:
PaperBLAST

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

27% id,
16% cov

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

32% id,
12% cov

P51182: pyruvate kinase (EC 2.7.1.40) from Sporosarcina psychrophila

32% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory