Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 11 curated entries in PaperBLAST's database that match '2.7.1.56' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_3518: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

Psest_3354: 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas stutzeri

26% id,
97% cov

AO356_07330: 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas fluorescens

23% id,
81% cov

K1PF_HALVD / D4GYE6: 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Haloferax volcanii
D4GYE6: 1-phosphofructokinase (EC 2.7.1.56) from Haloferax volcanii

24% id,
43% cov

Sama_0731: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq)
is similar to:
PaperBLAST

K1PF_MYCGE / Q49396: Putative 1-phosphofructokinase; Fructose 1-phosphate kinase; Fru1PK; EC 2.7.1.56 from Mycoplasma genitalium

23% id,
85% cov

Sama_0291: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

AO356_07330: 1-phosphofructokinase (EC 2.7.1.56) from Pseudomonas fluorescens

30% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory