Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 52 curated entries in PaperBLAST's database that match '2.7.1.8'.

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0944: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

GSPK_VIBCH / Q9KUA9: Glucosamine kinase GspK; GlcN kinase; EC 2.7.1.8 from Vibrio cholerae
gspK / Q9KUA9: glucosamine kinase (EC 2.7.1.8) from Vibrio cholerae

34% id,
97% cov

Sama_0298: ATPase, BadF/BadG/BcrA/BcrD type (RefSeq)
is similar to:
PaperBLAST

GSPK_VIBCH / Q9KUA9: Glucosamine kinase GspK; GlcN kinase; EC 2.7.1.8 from Vibrio cholerae
gspK / Q9KUA9: glucosamine kinase (EC 2.7.1.8) from Vibrio cholerae

33% id,
95% cov

Sama_1405: fructokinase (RefSeq)
is similar to:
PaperBLAST

BGLK_LISIN / Q926Y3: Beta-glucoside kinase; EC 2.7.1.85 from Listeria innocua

25% id,
90% cov

Sama_2438: inorganic polyphosphate/ATP-NAD kinase (RefSeq)
is similar to:
PaperBLAST

C7GJD6: NADH kinase (EC 2.7.1.86) from Saccharomyces cerevisiae

34% id,
50% cov

POS5_SCHPO / Q9UT98: NADH kinase pos5, mitochondrial; EC 2.7.1.86 from Schizosaccharomyces pombe

34% id,
50% cov

POS5_YEAST / Q06892: NADH kinase POS5, mitochondrial; EC 2.7.1.86 from Saccharomyces cerevisiae
Q06892: NAD+ kinase (EC 2.7.1.23); NADH kinase (EC 2.7.1.86) from Saccharomyces cerevisiae

32% id,
50% cov

More...

Sama_0731: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq)
is similar to:
PaperBLAST

PUKI_ARATH / Q94AT3: Pseudouridine kinase; EC 2.7.1.83 from Arabidopsis thaliana

21% id,
74% cov

Sama_1197: putative ROK-family protein (RefSeq)
is similar to:
PaperBLAST

BGLK_LISIN / Q926Y3: Beta-glucoside kinase; EC 2.7.1.85 from Listeria innocua

24% id,
52% cov

BGLK_LISMO / Q8Y3R9: Beta-glucoside kinase; EC 2.7.1.85 from Listeria monocytogenes

24% id,
52% cov

Sama_3518: carbohydrate kinase (RefSeq)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

35% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

147882-148106 (frame -1) on 248323
is similar to:
PaperBLAST

CHKA_HUMAN / P35790: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Homo sapiens

50% id,
8% cov

CHKA_RAT / Q01134: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Rattus norvegicus

49% id,
7% cov

CHKA_MOUSE / O54804: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Mus musculus

54% id,
6% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory