Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 185 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 140 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1662: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

72% id,
96% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

56% id,
99% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

58% id,
93% cov

More...

Sama_1108: alpha-glucosidase (RefSeq)
is similar to:
PaperBLAST

AEW20125.1: α-glucosidase (SusB;Aglu;BFO_2272) (EC 3.2.1.20)

40% id,
98% cov

Sama_3625: cell wall surface anchor family protein (RefSeq)
is similar to:
PaperBLAST

AAA57881.1: α-glucosidase (YgjK;EcYgjK;b3080) (EC 3.2.1.20|3.2.1.84)
ACB04164.1: ECDH10B_3255 (EC 3.2.1.20|3.2.1.84)
BAE77130.1: ECK3070:JW3051:b3080 (YgjK) (EC 3.2.1.20|3.2.1.84)

34% id,
69% cov

Sama_0156: glycosyl hydrolase family 31 protein (RefSeq)
is similar to:
PaperBLAST

ABR26230.1: α-glucosidase (EC 3.2.1.20)

30% id,
60% cov

AAM23323.1: α-glucosidase (GluA;TTE0006) (EC 3.2.1.20)
Q8RDL1: alpha-glucosidase (EC 3.2.1.20) from Caldanaerobacter subterraneus

32% id,
51% cov

BAA76396.1: α-glucosidase II / oligo-α-1,6-glucosidase (BthG II) (EC 3.2.1.10|3.2.1.20)
Q9F234: alpha-glucosidase (EC 3.2.1.20) from Bacillus thermoamyloliquefaciens

32% id,
40% cov

More...

Sama_1660: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

MalZ / b0403: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
malZ / P21517: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
P21517: alpha-glucosidase (EC 3.2.1.20) from Escherichia coli

25% id,
68% cov

AIZ92452.1: α-glucosidase Z (EO53_16270;MalZ;b0403) (EC 3.2.1.20)
BAE76183.1: maltodextrin glucosidase (MalZ) (EC 3.2.1.20)

25% id,
67% cov

MAL2_DROME / P07191: Maltase A2; Larval visceral protein D; EC 3.2.1.20 from Drosophila melanogaster
AAF59088.1: α-glucosidase D (LvpD) (EC 3.2.1.20)

25% id,
63% cov

More...

Sama_2453: 1,4-alpha-glucan branching enzyme (RefSeq)
is similar to:
PaperBLAST

BAE48285.1: α-glucosidase (Gsj) (EC 3.2.1.20)
Q33E90: alpha-glucosidase (EC 3.2.1.20) from Geobacillus sp.

23% id,
48% cov

BAA12704.1: α-glucosidase / exo-α-1,4-glucosidase (EC 3.2.1.20)

25% id,
26% cov

BAB59003.1: α-glucosidase / maltase (MalT;AO090038000234) (EC 3.2.1.20)

25% id,
18% cov

Sama_1659: glycosidase (RefSeq)
is similar to:
PaperBLAST

AAF71997.1: α-glucosidase (EC 3.2.1.20)

26% id,
18% cov

Sama_2452: glycogen operon protein (RefSeq)
is similar to:
PaperBLAST

CAA55409.1: α-1,4-glucosidase (MalA) (EC 3.2.1.20)

23% id,
18% cov

BAB59003.1: α-glucosidase / maltase (MalT;AO090038000234) (EC 3.2.1.20)

23% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory