Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 529 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1404: beta-glucosidase (RefSeq)
is similar to:

Sama_1404: Beta-glucosidase (EC from Shewanella amazonensis

100% id,
100% cov

ABD79509.1: β-glucosidase / cellodextrinase 3B (Sde_0245) (Ced3B) (EC|

48% id,
98% cov

AAG43575.1: cellobiase (CelA) (EC

47% id,
97% cov


Sama_1402: Beta-glucosidase (RefSeq)
is similar to:

ADD96762.1: β-glucosidase (Bgl1A;PB42H12) (Bgl1A) (EC
D5KX75: beta-glucosidase (EC from uncultured bacterium

60% id,
100% cov

ABR73190.1: β-glucosidase (BglM1;Mmwyl1_4295) (cold-active) (EC

55% id,
99% cov

ABD80656.1: β-glucosidase 1B (Sde_1394) (Bgl1B) (EC

55% id,
100% cov


Sama_1326: beta-hexosaminidase (RefSeq)
is similar to:

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC; EC from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC||2.4.1.-)

27% id,
58% cov

AEF56853.1: β-glucosidase A3 (EC

28% id,
55% cov

AAA80156.1: β-glucosidase / β-xylosidase (BgxA) (EC|

25% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2419208-2419876 (frame -2) on 248323
is similar to:

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC from Schizosaccharomyces pombe

33% id,
28% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory