Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1402: Beta-glucosidase (RefSeq) is similar to:	PaperBLAST
ABI35984.1: β-glycosidase (β-gly) (EC 3.2.1.21\|3.2.1.23)	47% id, 99% cov
A0A1E1FFN6: beta-glucosidase (EC 3.2.1.21); beta-galactosidase (EC 3.2.1.23); beta-D-fucosidase (EC 3.2.1.38) from uncultured microorganism	48% id, 94% cov
GH1A_CALOW / E4Q361: Multifunctional glycoside hydrolase; Multifunctional GH; CoGH1A; EC 3.2.1.21; EC 3.2.1.23; EC 3.2.1.37; EC 3.2.1.74; EC 3.2.1.91 from Caldicellulosiruptor owensensis	42% id, 98% cov
ACL74759.1: cellodextrin glucohydrolase (Ccel_0374) (EC 3.2.1.21\|3.2.1.23\|3.2.1.74)	39% id, 100% cov
AEQ38581.1: β-galactosidase (Mbgl) (EC 3.2.1.23)	37% id, 100% cov
AAC06038.1: β-glucosidase (β-gly;Sf?gly) (EC 3.2.1.21\|3.2.1.23\|3.2.1.38\|3.2.1.-)	35% id, 91% cov
BAD76622.1: β-galactosidase (GKGal1A;GK2337) (Gal1A) (EC 3.2.1.23)	32% id, 95% cov
BGAL_SACS2 / P22498: Beta-galactosidase; Lactase; EC 3.2.1.23 from Saccharolobus solfataricus AAD21094.1: β-glycosidase (LacS;Ssol98_010100014373) (EC 3.2.1.21\|3.2.1.23) P22498: beta-galactosidase (EC 3.2.1.23); non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) from Saccharolobus solfataricus	29% id, 94% cov
AAA72843.1: β-glycosidase S (LacS;Ss-β-gly;SSO3019) (EC 3.2.1.21\|3.2.1.23\|3.2.1.-)	29% id, 94% cov
AAB97862.1: β-galactosidase (EC 3.2.1.23) O52629: beta-galactosidase (EC 3.2.1.23) from Pyrococcus woesei	29% id, 73% cov
AAL81332.1: β-mannosidase / β-galactosidase (BmnA;PF1208) (EC 3.2.1.23\|3.2.1.25) E7FHC0: beta-galactosidase (EC 3.2.1.23) from Pyrococcus furiosus	29% id, 73% cov
A0A023MIF8: beta-glucosidase (EC 3.2.1.21); beta-galactosidase (EC 3.2.1.23); beta-D-fucosidase (EC 3.2.1.38) from Putranjiva roxburghii	37% id, 57% cov
BAB59827.1: TVG0691226 (EC 3.2.1.23)	28% id, 70% cov
More...

Sama_1404: beta-glucosidase (RefSeq) is similar to:	PaperBLAST
ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23\|3.2.1.-)	26% id, 68% cov

Sama_0302: glycoside hydrolase family protein (RefSeq) is similar to:	PaperBLAST
BGA2_ECOLI / P06864: Evolved beta-galactosidase subunit alpha; Beta-gal; Lactase; EC 3.2.1.23 from Escherichia coli	27% id, 14% cov
AAA61971.1: evolved β-galactosidase (EbgA;b3076) (EC 3.2.1.23)	27% id, 14% cov
AAZ81660.1: β-1,4-galactosidase (EC 3.2.1.23)	23% id, 13% cov
AAS18310.1: β-galactosidase (EC 3.2.1.23) Q6QTF4: beta-galactosidase (EC 3.2.1.23) from Kluyveromyces marxianus	30% id, 6% cov
AHW49176.1: β-galactosidase (BglKL) (EC 3.2.1.23) AAA35265.1: β-galactosidase (Lac4;BgaL) (EC 3.2.1.23) CAH02587.1: β-galactosidase (BgaL;KLLA0B14883g) (EC 3.2.1.23) P00723: beta-galactosidase (EC 3.2.1.23) from Kluyveromyces lactis	30% id, 6% cov
AMK07416.1: β-galactosidase (BglP) (EC 3.2.1.23)	28% id, 6% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

365283-367946 (frame +3) on 248323 is similar to:	PaperBLAST
BGA2_ECOLI / P06864: Evolved beta-galactosidase subunit alpha; Beta-gal; Lactase; EC 3.2.1.23 from Escherichia coli Also see hits to annotated proteins above	27% id, 15% cov
AAA61971.1: evolved β-galactosidase (EbgA;b3076) (EC 3.2.1.23) Also see hits to annotated proteins above	27% id, 15% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory