Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 128 curated entries in PaperBLAST's database that match '3.2.1.28' as complete word(s).

These curated entries have 75 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1662: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

54% id,
95% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

41% id,
93% cov

Sama_3625: cell wall surface anchor family protein (RefSeq)
is similar to:
PaperBLAST

ACN85420.1: trehalase (Tre-1) (soluble) (EC 3.2.1.28)
C0LZJ6: alpha,alpha-trehalase (EC 3.2.1.28) from Nilaparvata lugens

25% id,
61% cov

TREF_ECOLI / P62601: Cytoplasmic trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Escherichia coli
TreF / b3519: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli
AAC76544.1: trehalase (TreF;b3519) (EC 3.2.1.28)
treF / P62601: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli

25% id,
45% cov

Q9W2M2: alpha,alpha-trehalase (EC 3.2.1.28) from Drosophila melanogaster

26% id,
40% cov

More...

Sama_1660: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

36% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory