Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 13 curated entries in PaperBLAST's database that match '3.5.1.94' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2645: glutamine amidotransferase (RefSeq)
is similar to:		 PaperBLAST

Sama_2645: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis

 100% id,
100% cov

SO1267: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Shewanella oneidensis

 78% id,
98% cov

AO353_29305: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

 62% id,
98% cov

More...

Sama_0794: hypothetical protein (RefSeq)
is similar to:		 PaperBLAST

Sama_0794: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Shewanella amazonensis

 100% id,
100% cov

PP_3598: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Pseudomonas putida

 65% id,
92% cov

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

 45% id,
97% cov

More...

Sama_2358: GMP synthase (RefSeq)
is similar to:		 PaperBLAST

AO353_29305: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

 28% id,
65% cov

Sama_2645: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis

 37% id,
47% cov

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

 36% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory