Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 17 curated entries in PaperBLAST's database that match '3.5.3.12'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2521: agmatine deiminase (RefSeq)
is similar to:
PaperBLAST

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

58% id,
98% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

57% id,
99% cov

AGUA_ARATH / Q8GWW7: Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana
At5g08170 / Q8GWW7: agmatine iminohydrolase (EC 3.5.3.12) from Arabidopsis thaliana

52% id,
96% cov

More...

Sama_0473: carbon-nitrogen family hydrolase (RefSeq)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

28% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory