Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_3334: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

75% id,
100% cov

DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli
SpeF / b0693: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speF / P24169: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

70% id,
98% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

68% id,
100% cov

More...

Sama_0410: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

30% id,
89% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

30% id,
88% cov

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

29% id,
90% cov

More...

Sama_3250: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

27% id,
91% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

28% id,
72% cov

P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus

26% id,
75% cov

More...

Sama_1962: adenosylmethionine decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q9U8D4: ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum

33% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

506803-508014 (frame +1) on 248323
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca
Also see hits to annotated proteins above

29% id,
94% cov

DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum
odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum
Also see hits to annotated proteins above

29% id,
90% cov

DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum
ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum
Also see hits to annotated proteins above

30% id,
65% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory