Searching in Shewanella amazonensis SB2B (SB2B)
Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).
These curated entries have 34 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query
| Sama_3334: ornithine decarboxylase (RefSeq) is similar to: | PaperBLAST |
A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens | 75% id, 100% cov |
DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli | 70% id, 98% cov |
SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli | 68% id, 100% cov |
| Sama_0410: ornithine decarboxylase (RefSeq) is similar to: | PaperBLAST |
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis | 30% id, 89% cov |
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans | 30% id, 88% cov |
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca | 29% id, 90% cov |
| Sama_3250: diaminopimelate decarboxylase (RefSeq) is similar to: | PaperBLAST |
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei | 27% id, 91% cov |
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans | 28% id, 72% cov |
P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus | 26% id, 75% cov |
| Sama_1962: adenosylmethionine decarboxylase (RefSeq) is similar to: | PaperBLAST |
Q9U8D4: ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum | 33% id, 6% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 506803-508014 (frame +1) on 248323 is similar to: | PaperBLAST |
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca | 29% id, 94% cov |
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum | 29% id, 90% cov |
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum | 30% id, 65% cov |
Lawrence Berkeley National Laboratory