Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1963: arginine decarboxylase (RefSeq) is similar to:	PaperBLAST
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	67% id, 99% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	55% id, 97% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	56% id, 94% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	49% id, 98% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	48% id, 98% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	47% id, 98% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	44% id, 100% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	39% id, 98% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	39% id, 97% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	40% id, 92% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	39% id, 93% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	34% id, 99% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	34% id, 99% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	36% id, 88% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	36% id, 85% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	37% id, 84% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	36% id, 85% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	36% id, 86% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	36% id, 85% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	35% id, 86% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	35% id, 86% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	35% id, 84% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	35% id, 80% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	35% id, 71% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	45% id, 52% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	36% id, 65% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	34% id, 62% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 51% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	41% id, 51% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	41% id, 49% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	34% id, 28% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	42% id, 18% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	37% id, 20% cov
More...

Sama_3334: ornithine decarboxylase (RefSeq) is similar to:	PaperBLAST
E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica	31% id, 88% cov
ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli adiA / GI\|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	31% id, 89% cov

Sama_0410: ornithine decarboxylase (RefSeq) is similar to:	PaperBLAST
ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens	26% id, 78% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	26% id, 49% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	22% id, 51% cov

Sama_3250: diaminopimelate decarboxylase (RefSeq) is similar to:	PaperBLAST
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	25% id, 56% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	27% id, 52% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	28% id, 44% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	29% id, 42% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	26% id, 47% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	27% id, 44% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	24% id, 48% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	26% id, 45% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	26% id, 45% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	25% id, 46% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	26% id, 44% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	26% id, 43% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	25% id, 42% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	23% id, 46% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	23% id, 46% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	24% id, 42% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	24% id, 41% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	25% id, 40% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	25% id, 39% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	25% id, 39% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	24% id, 41% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	24% id, 39% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	23% id, 41% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	28% id, 30% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	25% id, 29% cov
More...

Sama_1641: polysaccharide biosynthesis protein (RefSeq) is similar to:	PaperBLAST
Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium	20% id, 32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory