Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 52 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1963: arginine decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus

67% id,
99% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

55% id,
97% cov

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

56% id,
94% cov

More...

Sama_1855: thiamine biosynthesis protein ThiH (RefSeq)
is similar to:
PaperBLAST

Q5R145: arginine decarboxylase (EC 4.1.1.19) from Malus sylvestris

60% id,
96% cov

Sama_3334: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

31% id,
88% cov

AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

31% id,
89% cov

Sama_0410: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

26% id,
78% cov

speA / A5KI48: arginine decarboxylase (biosynthetic) subunit (EC 4.1.1.19) from Campylobacter jejuni

26% id,
49% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

26% id,
49% cov

More...

Sama_3250: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

25% id,
56% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

27% id,
52% cov

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

28% id,
44% cov

More...

Sama_1641: polysaccharide biosynthesis protein (RefSeq)
is similar to:
PaperBLAST

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

20% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory