Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 27 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_3250: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

66% id,
100% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

49% id,
99% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

46% id,
97% cov

More...

Sama_0410: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

29% id,
92% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

29% id,
92% cov

lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis

29% id,
86% cov

More...

Sama_0603: aspartate kinase III (RefSeq)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

33% id,
53% cov

Sama_0905: bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

30% id,
52% cov

Sama_1963: arginine decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

24% id,
59% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

25% id,
58% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

23% id,
58% cov

More...

Sama_1049: aspartate kinase (RefSeq)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

31% id,
46% cov

Sama_3170: bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

33% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory