Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1809: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq)
is similar to:

Kga / b1850: KHG/KDPG aldolase (EC; EC; EC; EC from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC; EC; EC from Escherichia coli

64% id,
98% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC from Dickeya dadantii

63% id,
98% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC; EC from Thermotoga maritima

36% id,
78% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory