Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 21 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0335: 2-isopropylmalate synthase (RefSeq)
is similar to:

HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC; EC from Mycobacterium tuberculosis
P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC from Mycobacterium tuberculosis

25% id,
90% cov

P51017: 4-hydroxy-2-oxovalerate aldolase (EC from Pseudomonas putida

27% id,
85% cov

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC; EC from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC; 4-hydroxy-2-oxohexanoate aldolase (EC from Paraburkholderia xenovorans

22% id,
85% cov


Sama_1358: pyruvate carboxyltransferase (RefSeq)
is similar to:

P51017: 4-hydroxy-2-oxovalerate aldolase (EC from Pseudomonas putida

24% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory