Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 52 curated entries in PaperBLAST's database that match '4.2.1.12'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2133: tryptophan synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

79% id,
99% cov

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

58% id,
99% cov

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

60% id,
96% cov

More...

Sama_1810: phosphogluconate dehydratase (RefSeq)
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

68% id,
100% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

64% id,
100% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

58% id,
98% cov

Sama_3279: dihydroxy-acid dehydratase (RefSeq)
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
89% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

28% id,
88% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
51% cov

Sama_2134: tryptophan synthase subunit alpha (RefSeq)
is similar to:
PaperBLAST

A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis

30% id,
36% cov

Sama_0945: glutamine--fructose-6-phosphate transaminase (isomerizing) (RefSeq)
is similar to:
PaperBLAST

P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae

26% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory