Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2221: pterin-4-alpha-carbinolamine dehydratase (RefSeq)
is similar to:

Q48G05: 4a-hydroxytetrahydrobiopterin dehydratase (EC from Pseudomonas syringae

70% id,
92% cov

PHS_SCHPO / O42658: Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Overlapping meiotic transcript 2; Pterin carbinolamine dehydratase; PCD; EC from Schizosaccharomyces pombe
omt2 / RF|NP_594610.1: 4-alpha-hydroxytetrahydrobiopterin dehydratase (predicted); EC from Schizosaccharomyces pombe

33% id,
94% cov

PDL2_ARATH / Q6QJ72: Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial; 4-alpha-hydroxy-tetrahydropterin dehydratase; PCD/DCoH-like protein 2; EC from Arabidopsis thaliana

32% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory