Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1631: histidine ammonia-lyase (RefSeq) is similar to:	PaperBLAST
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	100% id, 100% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	55% id, 96% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	44% id, 96% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	43% id, 96% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	44% id, 94% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	43% id, 96% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	43% id, 96% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	43% id, 96% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	42% id, 97% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	41% id, 96% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	41% id, 95% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	42% id, 88% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	39% id, 95% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	38% id, 95% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	42% id, 74% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	42% id, 75% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	42% id, 75% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	42% id, 74% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	41% id, 75% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	41% id, 71% cov
More...

Sama_3385: histidine ammonia-lyase (RefSeq) is similar to:	PaperBLAST
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	33% id, 98% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	33% id, 95% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	31% id, 100% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	32% id, 97% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	34% id, 89% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	32% id, 92% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	32% id, 93% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	30% id, 96% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	33% id, 87% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	30% id, 94% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	32% id, 87% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	32% id, 87% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	31% id, 88% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	30% id, 92% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	37% id, 70% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	37% id, 70% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	35% id, 73% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	36% id, 70% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	37% id, 67% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	37% id, 67% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory