Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 14 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1530: hydroxyproline-2-epimerase (RefSeq)
is similar to:		 PaperBLAST

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

 38% id,
99% cov

H3ZMH5: proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis

 38% id,
98% cov

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

 37% id,
100% cov

More...

Sama_1532: putative proline racemase (RefSeq)
is similar to:		 PaperBLAST

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

 36% id,
99% cov

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

 36% id,
99% cov

PRCMB_TRYCC / Q868H8: Proline racemase B; TcPA45-B; TcPRACB; EC 5.1.1.4 from Trypanosoma cruzi
Q868H8: proline racemase (EC 5.1.1.4) from Trypanosoma cruzi

 35% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory