Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 49 curated entries in PaperBLAST's database that match '5.4.2.2'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1706: phosphoglucomutase (RefSeq)
is similar to:
PaperBLAST

A0A0H3NJ17: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Salmonella enterica
Q8ZQW9: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Salmonella enterica

59% id,
100% cov

PGM_ECOLI / P36938: Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Escherichia coli
Blu / b0688: phosphoglucomutase (EC 5.4.2.2) from Escherichia coli
pgm / GB|ABB65241.1: phosphoglucomutase; EC 5.4.2.2 from Escherichia coli
pgm / P36938: phosphoglucomutase (EC 5.4.2.2) from Escherichia coli

58% id,
100% cov

pgmA / I6Y2G3: phosphoglucomutase (EC 5.4.2.2) from Mycobacterium tuberculosis
I6Y2G3: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Mycobacterium tuberculosis

54% id,
100% cov

More...

Sama_1189: phosphoglucomutase/phosphomannomutase family protein (RefSeq)
is similar to:
PaperBLAST

C6L2F4: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Toxoplasma gondii

39% id,
92% cov

PGCA_BACSU / P18159: Phosphoglucomutase; PGM; Alpha-phosphoglucomutase; Glucose phosphomutase; EC 5.4.2.2 from Bacillus subtilis
pgcA / P18159: α-phosphoglucomutase (EC 5.4.2.2) from Bacillus subtilis

37% id,
94% cov

PGM2_HUMAN / Q96G03: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Homo sapiens
PGM2 / Q96G03: phosphoglucomutase-2 (EC 5.4.2.2; EC 5.4.2.7) from Homo sapiens

36% id,
92% cov

More...

Sama_2243: phosphoglucosamine mutase (RefSeq)
is similar to:
PaperBLAST

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

35% id,
97% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

30% id,
100% cov

Q8PGN7: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Xanthomonas citri

29% id,
100% cov

More...

Sama_0956: phosphoglucosamine mutase (RefSeq)
is similar to:
PaperBLAST

PGMMM_THEKO / Q68BJ6: Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis

35% id,
95% cov

Q980S1: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus

30% id,
99% cov

M1T754: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Sphingomonas sanxanigenens

29% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1456414-1458207 (frame +1) on 248323
is similar to:
PaperBLAST

C6L2F4: phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Toxoplasma gondii
Also see hits to annotated proteins above

39% id,
94% cov

PGM2_MOUSE / Q7TSV4: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus
Also see hits to annotated proteins above

36% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory