Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 18 curated entries in PaperBLAST's database that match '5.4.2.7'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0975: phosphopentomutase (RefSeq)
is similar to:
PaperBLAST

SO1219: Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis

86% id,
100% cov

Tlr / b4383: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
deoB / RF|NP_418800: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB / P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli

69% id,
100% cov

Dshi_0829: Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae

48% id,
100% cov

More...

Sama_1189: phosphoglucomutase/phosphomannomutase family protein (RefSeq)
is similar to:
PaperBLAST

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

37% id,
94% cov

PGM2_HUMAN / Q96G03: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Homo sapiens
PGM2 / Q96G03: phosphoglucomutase-2 (EC 5.4.2.2; EC 5.4.2.7) from Homo sapiens

36% id,
92% cov

PGM2_MOUSE / Q7TSV4: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus

36% id,
91% cov

More...

Sama_2243: phosphoglucosamine mutase (RefSeq)
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

29% id,
98% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

23% id,
73% cov

PGM3_YEAST / Q03262: Phosphoribomutase; PRM; Phosphoglucomutase 3; PGM 3; EC 5.4.2.7 from Saccharomyces cerevisiae

21% id,
65% cov

More...

Sama_0956: phosphoglucosamine mutase (RefSeq)
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

29% id,
95% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

24% id,
67% cov

PGM2_MOUSE / Q7TSV4: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus

24% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory