Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 186 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2079: acetyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

70% id,
99% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

69% id,
99% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

69% id,
99% cov

More...

Sama_1364: acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (RefSeq)
is similar to:
PaperBLAST

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi

60% id,
98% cov

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens

59% id,
98% cov

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
A0A0G2K047: propionate-CoA ligase (EC 6.2.1.17) from Rattus norvegicus

52% id,
90% cov

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Sama_1904: AMP-binding domain protein (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
99% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

33% id,
96% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

30% id,
95% cov

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Sama_1760: acetyltransferase (RefSeq)
is similar to:
PaperBLAST

ACDA2_PYRFU / Q8U3D6: Acetate--CoA ligase [ADP-forming] II subunit alpha; ADP-forming acetyl coenzyme A synthetase II subunit alpha; ACS II subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus

35% id,
98% cov

Q5JIA8: acetate-CoA ligase (ADP-forming) (subunit 2/2) (EC 6.2.1.13) from Thermococcus kodakarensis

35% id,
98% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

35% id,
97% cov

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Sama_1430: succinyl-CoA synthetase alpha chain (RefSeq)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

35% id,
82% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
30% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
30% cov

Sama_1934: long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

31% id,
93% cov

4CL2_ARATH / Q9S725: 4-coumarate--CoA ligase 2; 4CL 2; 4-coumarate--CoA ligase isoform 2; At4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Arabidopsis thaliana
4CL2 / Q9S725: 4-coumarate coenzyme A ligase 2 (EC 6.2.1.12) from Arabidopsis thaliana
Q9S725: 4-coumarate-CoA ligase (EC 6.2.1.12) from Arabidopsis thaliana

31% id,
93% cov

4CL2_NARPS / A0A2H5AIY4: 4-coumarate-CoA ligase 2; EC 6.2.1.12 from Narcissus pseudonarcissus

29% id,
97% cov

More...

Sama_1429: succinyl-CoA synthetase subunit beta (RefSeq)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

31% id,
93% cov

Sama_2897: long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

Q8S5C1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Glycine max

31% id,
92% cov

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

28% id,
99% cov

4CL1_PETHY / I3PB37: 4-coumarate:CoA ligase 1; Ph-4CL1; Ph4CL1; (E)-caffeate:CoA ligase 4CL1; Benzoate:CoA ligase 4CL1; Trans-cinnamate:CoA ligase 4CL1; Trans-ferulate:CoA ligase 4CL1; EC 6.2.1.12; EC 6.2.1.-; EC 6.2.1.25 from Petunia hybrida

28% id,
98% cov

More...

Sama_3571: AMP-binding family protein (RefSeq)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

32% id,
84% cov

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

31% id,
83% cov

ACSL1_RAT / P18163: Long-chain-fatty-acid--CoA ligase 1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain-fatty-acid--CoA ligase, liver isozyme; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Rattus norvegicus

30% id,
83% cov

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Sama_0261: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

28% id,
87% cov

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

27% id,
88% cov

ACSL6_HUMAN / Q9UKU0: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens
ACSL6 / Q9UKU0: long-chain acyl-CoA synthetase 6 (EC 6.2.1.15) from Homo sapiens

27% id,
85% cov

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Sama_3463: O-succinylbenzoic acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

25% id,
95% cov

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus

23% id,
86% cov

ACSM3_HUMAN / Q53FZ2: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Homo sapiens

22% id,
83% cov

More...

Sama_1184: peptide synthase (RefSeq)
is similar to:
PaperBLAST

CNL / J9ZU73: cinnamate:CoA ligase (EC 6.2.1.12) from Hypericum calycinum

24% id,
75% cov

ACSL3_RAT / Q63151: Fatty acid CoA ligase Acsl3; Arachidonate--CoA ligase Acsl3; Brain acyl-CoA synthetase II; Long-chain acyl-CoA synthetase 3; LACS 3; Long-chain-fatty-acid--CoA ligase 3; Medium-chain acyl-CoA ligase Acsl3; EC 6.2.1.15; EC 6.2.1.3; EC 6.2.1.2 from Rattus norvegicus

25% id,
56% cov

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

23% id,
55% cov

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Sama_3382: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

24% id,
64% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

23% id,
65% cov

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum

22% id,
65% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory