Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0259: argininosuccinate synthase (RefSeq) is similar to:	PaperBLAST
ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus	53% id, 98% cov
A4I066: argininosuccinate synthase (EC 6.3.4.5) from Leishmania infantum	53% id, 94% cov
H9BG20: argininosuccinate synthase (EC 6.3.4.5) from Leishmania donovani	53% id, 94% cov
ASSY_THEMA / Q9X2A1: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermotoga maritima	45% id, 97% cov
ASSY_SCHPO / O94354: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Schizosaccharomyces pombe arg12 / RF\|NP_595183.1: argininosuccinate synthase (predicted); EC 6.3.4.5 from Schizosaccharomyces pombe	44% id, 97% cov
ASSY_RAT / P09034: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Rattus norvegicus	42% id, 97% cov
Q2Z0F6: argininosuccinate synthase (EC 6.3.4.5) from Agaricus bisporus	44% id, 92% cov
ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Bos taurus	42% id, 98% cov
ASSY_HUMAN / P00966: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Homo sapiens ASS1 / P00966: Argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens P00966: argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens	42% id, 97% cov
ASSY_YEAST / P22768: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Saccharomyces cerevisiae	42% id, 96% cov
ASSY_MOUSE / P16460: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Mus musculus P16460: argininosuccinate synthase (EC 6.3.4.5) from Mus musculus	41% id, 97% cov
S4V5K7: argininosuccinate synthase (EC 6.3.4.5) from Protopterus annectens	40% id, 94% cov
ARG1: argininosuccinate synthase; EC 6.3.4.5 from Candida albicans	43% id, 83% cov
N515DRAFT_3766: arginosuccinate synthetase (EC 6.3.4.5) from Dyella japonica	35% id, 98% cov
BT3760: arginosuccinate synthetase (EC 6.3.4.5) from Bacteroides thetaiotaomicron	30% id, 98% cov
ASSY_ECOLI / P0A6E4: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Escherichia coli ArgG / b3172: argininosuccinate synthetase (EC 6.3.4.5) from Escherichia coli	28% id, 89% cov
More...

Sama_1826: ExsB protein (RefSeq) is similar to:	PaperBLAST
N515DRAFT_3766: arginosuccinate synthetase (EC 6.3.4.5) from Dyella japonica	38% id, 16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory