Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 9 curated entries in PaperBLAST's database that match 'anthranilate synthase component 1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2129: anthranilate synthase component I (RefSeq)
is similar to:
PaperBLAST

TRPE_ECOLI / P00895: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Escherichia coli

55% id,
95% cov

TRPE_SALTY / P00898: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Salmonella typhimurium

55% id,
95% cov

TRPE_SERMA / P00897: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Serratia marcescens

53% id,
97% cov

More...

Sama_1687: para-aminobenzoate synthase, component I (RefSeq)
is similar to:
PaperBLAST

TRPE_PSEAE / P20580: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Pseudomonas aeruginosa

33% id,
97% cov

TRPE_YEAST / P00899: Anthranilate synthase component 1; Anthranilate synthase component I; EC 4.1.3.27 from Saccharomyces cerevisiae

33% id,
84% cov

TRPE_SACS2 / Q06128: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Saccharolobus solfataricus

33% id,
82% cov

More...

Sama_0130: menaquinone-specific isochorismate synthase, putative (RefSeq)
is similar to:
PaperBLAST

TRPE_SACS2 / Q06128: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Saccharolobus solfataricus

32% id,
57% cov

TRPE_PSEPU / P20579: Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 from Pseudomonas putida

29% id,
59% cov

TRPE_ARATH / P32068: Anthranilate synthase alpha subunit 1, chloroplastic; Anthranilate synthase component 1-1; Anthranilate synthase component I-1; Protein A-METHYL TRYPTOPHAN RESISTANT 1; Protein JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1; Protein TRYPTOPHAN BIOSYNTHESIS 5; Protein WEAK ETHYLENE INSENSITIVE 2; EC 4.1.3.27 from Arabidopsis thaliana

24% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory