Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 8 curated entries in PaperBLAST's database that match 'anthranilate synthase component I' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1687: para-aminobenzoate synthase, component I (RefSeq)
is similar to:
PaperBLAST

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

35% id,
94% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

33% id,
91% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

33% id,
92% cov

More...

Sama_2129: anthranilate synthase component I (RefSeq)
is similar to:
PaperBLAST

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

39% id,
84% cov

trpE / AAD09116.1: anthranilate synthase component I from Rhodobacter sphaeroides

41% id,
79% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

39% id,
80% cov

More...

Sama_0130: menaquinone-specific isochorismate synthase, putative (RefSeq)
is similar to:
PaperBLAST

trpE: anthranilate synthase component I; EC 4.1.3.27 from Leptospira biflexa

25% id,
80% cov

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

29% id,
63% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

28% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory