Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 3 curated entries in PaperBLAST's database that match 'anthranilate synthase component II' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_3015: para-aminobenzoate synthase glutamine amidotransferase, component II (RefSeq)
is similar to:
PaperBLAST

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

56% id,
95% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

50% id,
95% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

43% id,
99% cov

Sama_2130: anthranilate synthase component II (RefSeq)
is similar to:
PaperBLAST

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

46% id,
98% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

46% id,
93% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

37% id,
97% cov

Sama_2504: carbamoyl phosphate synthase small subunit (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

32% id,
84% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

25% id,
90% cov

Sama_2358: GMP synthase (RefSeq)
is similar to:
PaperBLAST

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

24% id,
99% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

24% id,
95% cov

Sama_2645: glutamine amidotransferase (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

29% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory