Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 3 curated entries in PaperBLAST's database that match 'sorbitol-6-phosphate dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1980: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

33% id,
98% cov

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

31% id,
99% cov

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

30% id,
99% cov

Sama_1381: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

28% id,
97% cov

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

28% id,
98% cov

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

27% id,
98% cov

Sama_1741: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

26% id,
97% cov

Sama_2250: acetoacetyl-CoA reductase (RefSeq)
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

25% id,
95% cov

Sama_0517: D-beta-hydroxybutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

24% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory