Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 35 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1662: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

6lgbA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase complexed with glucose

35% id,
92% cov

6lggA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q complexed with sucrose

34% id,
92% cov

6lgfA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant d247n complexed with sucrose

34% id,
92% cov

More...

Sama_1660: alpha amylase, catalytic region (RefSeq)
is similar to:
PaperBLAST

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

28% id,
32% cov

3czgA / Q6UVM5: Crystal structure analysis of sucrose hydrolase (suh)-glucose complex

28% id,
32% cov

3czlA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-glucose complex

28% id,
32% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory