Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.179' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 21 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc04133: oxidoreductase
is similar to:
PaperBLAST

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

58% id,
98% cov

SMc00375: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

36% id,
98% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

29% id,
93% cov

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

28% id,
96% cov

More...

SMa2313: Oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

32% id,
95% cov

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

30% id,
98% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

28% id,
99% cov

More...

SMc04400: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

29% id,
100% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

25% id,
93% cov

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

28% id,
80% cov

More...

SM_b21355: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

27% id,
97% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

32% id,
41% cov

SMc03812: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

26% id,
97% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

22% id,
86% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

33% id,
46% cov

More...

SM_b20330: trehalosemaltose utilization protein, function
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

24% id,
98% cov

DHDH_HUMAN / Q9UQ10: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Hum2DD; EC 1.3.1.20; EC 1.1.1.179 from Homo sapiens

23% id,
81% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

23% id,
72% cov

More...

SM_b21597: exported oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

22% id,
100% cov

SM_b20353: oxidoreductase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

23% id,
94% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

25% id,
67% cov

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

27% id,
64% cov

More...

SMc02469: oxidoreductase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

22% id,
96% cov

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

25% id,
63% cov

SM_b20247: oxidoreductase
is similar to:
PaperBLAST

DHDH_MACFA / Q9TQS6: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Cmo2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Macaca fascicularis
DHDH_MACFU / Q7JK39: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Jmo2DD; EC 1.3.1.20; EC 1.1.1.179 from Macaca fuscata
Q9TQS6: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179); trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Macaca fascicularis

27% id,
79% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

27% id,
74% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

25% id,
76% cov

More...

SM_b20899: myo-inositol dehydrogenase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

29% id,
72% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

25% id,
73% cov

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

25% id,
73% cov

More...

SMc04253: oxidoreductase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

27% id,
72% cov

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

23% id,
83% cov

SMc04139: oxidoreductase
is similar to:
PaperBLAST

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

26% id,
74% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

27% id,
69% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

26% id,
68% cov

More...

SMc01163: oxidoreductase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

26% id,
73% cov

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

26% id,
69% cov

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

27% id,
57% cov

SMc03161: oxidoreductase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

27% id,
64% cov

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

26% id,
54% cov

XDH_SCHPO / Q9UT60: Probable D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase homolog; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Schizosaccharomyces pombe

24% id,
45% cov

SMc00588: D-galactose 1-dehydrogenase
is similar to:
PaperBLAST

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

26% id,
64% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

26% id,
46% cov

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

24% id,
26% cov

SMa1973: hypothetical protein
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

38% id,
30% cov

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

35% id,
31% cov

SM_b21148: oxidoreductase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

23% id,
46% cov

SMc04138: oxidoreductase
is similar to:
PaperBLAST

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

24% id,
39% cov

SM_b21109: oxidoreductase
is similar to:
PaperBLAST

XDH_SCHPO / Q9UT60: Probable D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase homolog; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Schizosaccharomyces pombe

26% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 21 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

359794-361860 (frame +1) on NC_003078
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui
Also see hits to annotated proteins above

23% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory