Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20037: shikimate 5-dehydrogenase
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

58% id,
99% cov

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

51% id,
99% cov

AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus
Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus

39% id,
96% cov

More...

SMc02791: shikimate 5-dehydrogenase
is similar to:
PaperBLAST

CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus

44% id,
89% cov

Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida

38% id,
97% cov

Q9WYI1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermotoga maritima

39% id,
92% cov

More...

SMc02044: hypothetical protein
is similar to:
PaperBLAST

CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus

28% id,
53% cov

SMc00696: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

37% id,
24% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
14% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
10% cov

More...

SMc01572: oxidoreductase
is similar to:
PaperBLAST

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

34% id,
23% cov

SMa0512: IdnD L-idonate 5-dehydrogenase
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

41% id,
19% cov

SMc02465: succinate dehydrogenase flavoprotein subunit
is similar to:
PaperBLAST

A0A168S2B8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

29% id,
19% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

29% id,
17% cov

SMc03265: amino acid dehydrogenase transmembrane protein
is similar to:
PaperBLAST

A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis

41% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory