Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.343' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc04262: 6-phosphogluconate dehydrogenase
is similar to:
PaperBLAST

6PGDH_BACSU / P12013: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis
P12013: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis

47% id,
99% cov

Q9WYR9: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Thermotoga maritima

45% id,
99% cov

A0A1J5NX54: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

38% id,
96% cov

More...

SM_b20710: dehydrogenase
is similar to:
PaperBLAST

A0A1J5NX54: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

26% id,
82% cov

SM_b20751: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

A9H324: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconacetobacter diazotrophicus

26% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory