Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00480: isocitrate dehydrogenase
is similar to:
PaperBLAST

B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum

73% id,
100% cov

icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis
P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis
A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis

73% id,
99% cov

ICDHC_ARATH / Q9SRZ6: Cytosolic isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana
cICDH / Q9SRZ6: NADP+-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Arabidopsis thaliana
Q9SRZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana

69% id,
99% cov

More...

SMa1846: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

32% id,
85% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

30% id,
86% cov

Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus

29% id,
85% cov

More...

SMc04405: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

29% id,
92% cov

P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

29% id,
91% cov

Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus

27% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory