Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 1 curated entries in PaperBLAST's database that match '1.13.12.4' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b20850: L-lactate dehydrogenase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

33% id,
94% cov

SMa0404: FMN-dependent dehydrogenase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

34% id,
91% cov

SMc01712: L-lactate dehydrogenase (cytochrome) protein
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

32% id,
93% cov

SMc01740: L-lactate dehydrogenase (cytochrome) protein
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

38% id,
39% cov

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

29% id,
45% cov

SM_b20858: hypothetical protein
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

43% id,
32% cov

SMc02612: oxidoreductase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

36% id,
24% cov

SMc00815: inosine 5'-monophosphate dehydrogenase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

31% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory