Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00711: cyclohexadienyl dehydrogenase
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea

24% id,
77% cov

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

23% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2868977-2869915 (frame -3) on NC_003047
is similar to:
PaperBLAST

Ga0059261_2298: prephenate and/or arogenate dehydrogenase (EC 1.3.1.13) from Sphingomonas koreensis

31% id,
77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory