Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 3 curated entries in PaperBLAST's database that match '1.3.8.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMa1400: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

43% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

41% id,
91% cov

SM_b21121: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

40% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

38% id,
91% cov

SM_b20753: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

39% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

37% id,
91% cov

SMc01639: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

35% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

34% id,
92% cov

SMc00977: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

29% id,
89% cov

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

29% id,
87% cov

SMc01359: oxidoreductase
is similar to:
PaperBLAST

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

26% id,
73% cov

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

26% id,
71% cov

SMa2073: hypothetical protein
is similar to:
PaperBLAST

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

24% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory