Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 23 curated entries in PaperBLAST's database that match '1.3.8.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SM_b21121: isovaleryl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 100% id,
100% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

 75% id,
100% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

 75% id,
100% cov

More...

SMc01359: oxidoreductase
is similar to:		 PaperBLAST

AidB / b4187: putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli
AidB / P33224: isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor (EC 1.3.8.4) from Escherichia coli

 45% id,
94% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

 26% id,
80% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

 25% id,
80% cov

More...

SMa1400: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 40% id,
95% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 39% id,
97% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 39% id,
97% cov

More...

SM_b20753: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 36% id,
99% cov

B5UB85: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Bombyx mori

 38% id,
91% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 34% id,
98% cov

More...

SMc01639: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 35% id,
99% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 35% id,
98% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

 33% id,
97% cov

More...

SM_b21181: glutaryl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 36% id,
97% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

 36% id,
96% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 34% id,
97% cov

More...

SMc00977: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 31% id,
98% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 30% id,
95% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 29% id,
97% cov

More...

SMc02229: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

Q75N94: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae

 27% id,
80% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 27% id,
72% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 29% id,
64% cov

More...

SMa2091: hypothetical protein
is similar to:		 PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 26% id,
62% cov

Q75N94: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae

 26% id,
58% cov

SMa2089: hypothetical protein
is similar to:		 PaperBLAST

Q75N94: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae

 29% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory