Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 27 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02049: glycine dehydrogenase
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

60% id,
98% cov

P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

57% id,
94% cov

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

57% id,
93% cov

More...

SMc02487: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

57% id,
92% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

56% id,
91% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

56% id,
91% cov

More...

SMa0228: glutamate dehydrogenase
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

51% id,
100% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

49% id,
100% cov

gluD / GB|AAA62756.1: NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Clostridium difficile
P27346: glutamate dehydrogenase (EC 1.4.1.2) from Clostridioides difficile

34% id,
94% cov

More...

SMc02048: glycine cleavage system protein H
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

55% id,
92% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

55% id,
73% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

44% id,
89% cov

More...

SMc02047: glycine cleavage system aminomethyltransferase T
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

46% id,
94% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

45% id,
92% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

44% id,
91% cov

More...

SMc04085: hypothetical protein
is similar to:
PaperBLAST

A0A0H3C571: glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides

42% id,
100% cov

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

44% id,
94% cov

Q8CJY0: glutamate dehydrogenase (EC 1.4.1.2) from Streptomyces coelicolor

41% id,
96% cov

More...

SMc03204: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

40% id,
96% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

40% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

40% id,
91% cov

More...

SMc01035: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

39% id,
93% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
92% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

35% id,
99% cov

More...

SMc04148: aminomethyltransferase
is similar to:
PaperBLAST

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

32% id,
97% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

31% id,
99% cov

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

32% id,
91% cov

More...

SMa2145: glycine cleavage system protein T
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

31% id,
99% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

28% id,
94% cov

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

24% id,
91% cov

More...

SMc00300: soluble pyridine nucleotide transhydrogenase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
99% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

32% id,
90% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

32% id,
91% cov

More...

SM_b21143: mercuric reductase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
94% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
98% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

31% id,
89% cov

More...

SMc01717: mercuric reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
99% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

31% id,
92% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

29% id,
97% cov

More...

SMc01662: oxidoreductase
is similar to:
PaperBLAST

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

30% id,
96% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

32% id,
90% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

26% id,
99% cov

More...

SMc01663: oxidoreductase
is similar to:
PaperBLAST

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

29% id,
97% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

23% id,
88% cov

SMc04153: aminomethyltransferase
is similar to:
PaperBLAST

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

29% id,
91% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

28% id,
89% cov

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

30% id,
81% cov

More...

SMc00154: glutathione reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

27% id,
99% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

27% id,
94% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

28% id,
92% cov

More...

SM_b21534: dehydrogenase
is similar to:
PaperBLAST

O58888: glycine cleavage system (EC 1.4.1.27) from Pyrococcus horikoshii

26% id,
96% cov

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

29% id,
82% cov

SMc01987: dehydrogenase
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

27% id,
92% cov

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

27% id,
84% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

25% id,
89% cov

More...

SMa1483: dehydrogenase
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

26% id,
88% cov

SMc03931: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

24% id,
89% cov

O65396: glycine cleavage system (subunit 1/5) (EC 1.4.1.27) from Arabidopsis thaliana

24% id,
89% cov

SMa0486: ornithine cyclodeaminase
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

21% id,
94% cov

SM_b21494: ornithine cyclodeaminase
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

27% id,
73% cov

SMc00914: oxidoreductase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

25% id,
57% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

27% id,
48% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

26% id,
35% cov

SMc02016: ferredoxin reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

26% id,
48% cov

SM_b20820: ferredoxin reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

27% id,
44% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

25% id,
43% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

25% id,
43% cov

More...

SMc01576: oxidoreductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

28% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 28 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2014017-2015570 (frame -2) on NC_003047
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

27% id,
97% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

26% id,
97% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
Also see hits to annotated proteins above

27% id,
91% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory