Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02049: glycine dehydrogenase
is similar to:
PaperBLAST

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

62% id,
99% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

62% id,
99% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

61% id,
99% cov

More...

SMc02048: glycine cleavage system protein H
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

46% id,
71% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

42% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1673249-1673869 (frame -3) on NC_003047
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
92% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens
Also see hits to annotated proteins above

37% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory