Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 2 curated entries in PaperBLAST's database that match '1.5.1.12'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02181: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

60% id,
95% cov

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

30% id,
89% cov

SM_b20424: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

28% id,
88% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
33% cov

SMa1844: aldehyde
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

29% id,
83% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
36% cov

SM_b20891: dehydrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

30% id,
81% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
34% cov

SMc00094: betaine aldehyde dehydrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

28% id,
85% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
33% cov

SMc01656: gamma-aminobutyraldehyde dehydrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
82% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
33% cov

SM_b21539: aldehyde dehydrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

25% id,
86% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
33% cov

SMa1848: GabD5 succinate semialdehyde dehdyrogenase
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

25% id,
85% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
34% cov

SMc02780: succinate-semialdehyde dehydrogenase [NADP+] protein
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

25% id,
84% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

31% id,
33% cov

SMc04385: aldehyde dehydrogenase transmembrane protein
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
38% cov

SMa2213: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
35% cov

SMa0260: GabD3 succinate-semialdehyde dehdyrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
35% cov

SM_b21301: ly membrane-anchored aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
37% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
19% cov

SMa1731: betaine aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
33% cov

SM_b21185: succinate-semialdehyde dehydrogenase (NAD(P)+) protein
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

SMa0220: NAD-dependent aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
34% cov

SMc02689: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
32% cov

SMa0805: GabD4 succinate-semialdehyde dehdyrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
33% cov

SMc00781: malonic semialdehyde oxidative decarboxylase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
33% cov

SMa0796: hypothetical protein
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
32% cov

SMc01971: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
34% cov

SMa1415: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1047547-1049136 (frame +1) on NC_003037
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans
Also see hits to annotated proteins above

25% id,
96% cov

1067357-1069726 (frame +2) on NC_003078
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans
Also see hits to annotated proteins above

24% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory