Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 67 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc01770: serine hydroxymethyltransferase
is similar to:
PaperBLAST

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

70% id,
98% cov

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

64% id,
100% cov

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

64% id,
98% cov

More...

SMa2135: GlyA2 serine hydroxymethyltransferase, SHMT
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

65% id,
99% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

64% id,
95% cov

GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus
Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus

60% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory