Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02546: alpha-isopropylmalate/homocitrate synthase family transferase
is similar to:
PaperBLAST

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens
cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens

48% id,
99% cov

DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris

46% id,
98% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

44% id,
100% cov

More...

SMc02717: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

24% id,
98% cov

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius

24% id,
96% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

27% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory