Curated BLAST for Genomes


Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 28 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc00155: DAHP synthetase prtein
is similar to:

AROG2_PETHY / A0A067XGX8: Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; DAHP synthase 2; PhDAHP2; Phospho-2-keto-3-deoxyheptonate aldolase 2; EC from Petunia hybrida

58% id,
87% cov

O68903: 3-deoxy-7-phosphoheptulonate synthase (EC from Actinosynnema pretiosum

52% id,
95% cov

P29976: 3-deoxy-7-phosphoheptulonate synthase (EC from Arabidopsis thaliana

57% id,
86% cov


SMc01027: 2-dehydro-3-deoxyphosphooctonate aldolase
is similar to:

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC from uncultured bacterium

27% id,
92% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC from Aeropyrum pernix

27% id,
86% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC from Thermotoga maritima

32% id,
69% cov


SMc03858: chorismate mutase
is similar to:

Echvi_0120: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC; EC from Echinicola vietnamensis

28% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory