Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.1' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc02835: glucokinase
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

36% id,
96% cov

SMc03109: hypothetical protein
is similar to:
PaperBLAST

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

32% id,
97% cov

SMc02880: hypothetical protein
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

30% id,
97% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

30% id,
97% cov

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

28% id,
97% cov

More...

SM_b21222: transcriptional regulator
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

29% id,
95% cov

glcK / P54495: glucokinase (EC 2.7.1.1) from Bacillus subtilis

27% id,
94% cov

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

24% id,
86% cov

More...

SMc03816: transcriptional regulator
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

28% id,
94% cov

glcK / P54495: glucokinase (EC 2.7.1.1) from Bacillus subtilis

25% id,
98% cov

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

29% id,
79% cov

SMa2303: ROK family transcriptional regulator
is similar to:
PaperBLAST

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

32% id,
83% cov

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

31% id,
83% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

27% id,
97% cov

More...

SMc02875: hypothetical protein
is similar to:
PaperBLAST

Q96Y14: hexokinase (EC 2.7.1.1) from Sulfurisphaera tokodaii

29% id,
86% cov

SMc02470: transcriptional regulator
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

25% id,
99% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

25% id,
99% cov

SMa2004: ROK family transcriptional regulator
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

30% id,
44% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

30% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3231055-3232020 (frame -1) on NC_003047
is similar to:
PaperBLAST

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima
Also see hits to annotated proteins above

32% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory