Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 16 curated entries in PaperBLAST's database that match '2.7.1.45' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc01531: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

KDGK_ECOLI / P37647: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli
YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli

40% id,
100% cov

KDGK_ECOLW / E0J5J4: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli

39% id,
100% cov

KDGK_DICD3 / P45416: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Dickeya dadantii

37% id,
100% cov

More...

SMc02164: fructokinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

32% id,
95% cov

KDGK_BACSU / P50845: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Bacillus subtilis

28% id,
79% cov

D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

26% id,
38% cov

SM_b21374: sugar kinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

31% id,
99% cov

RR42_RS28860: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus basilensis

30% id,
92% cov

SMc01165: sugar kinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

30% id,
92% cov

KDGK_THETE / Q704D0: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermoproteus tenax

28% id,
91% cov

KDGK_BACSU / P50845: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Bacillus subtilis

26% id,
96% cov

More...

SM_b21462: sugar kinase
is similar to:
PaperBLAST

RR42_RS28860: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus basilensis

28% id,
92% cov

SMc02875: hypothetical protein
is similar to:
PaperBLAST

KDGK_THEAC / Q9HLV3: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxy-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermoplasma acidophilum

32% id,
75% cov

SMc01103: ribokinase
is similar to:
PaperBLAST

D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

26% id,
92% cov

2afbA / Q9WXS2: Crystal structure of 2-dehydro-3- deoxygluconokinase (ec 2.7.1.45) (tm0067) from thermotoga maritima at 2.05 a resolution

24% id,
93% cov

Q9WXS2: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Thermotoga maritima

24% id,
92% cov

SMc02846: sugar kinase
is similar to:
PaperBLAST

KDGK_THET8 / Q53W83: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermus thermophilus

27% id,
82% cov

KDGK_ECOLI / P37647: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli
YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli

35% id,
26% cov

KDGK_ECOLW / E0J5J4: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli

35% id,
26% cov

More...

SMc03138: sugar kinase
is similar to:
PaperBLAST

KDGK_ECOLI / P37647: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli
YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli

35% id,
34% cov

KDGK_ECOLW / E0J5J4: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Escherichia coli

35% id,
34% cov

KDGK_DICD3 / P45416: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Dickeya dadantii

34% id,
34% cov

SMc00473: carbohydrate kinase
is similar to:
PaperBLAST

KDGK_THETE / Q704D0: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Thermoproteus tenax

29% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory