Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium meliloti 1021 (Smeli)

Found 10 curated entries in PaperBLAST's database that match '2.7.1.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sinorhizobium meliloti 1021, or try another query

SMc03003: hypothetical protein
is similar to:
PaperBLAST

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti

100% id,
100% cov

rhaK / Q7BSH0: rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum

55% id,
98% cov

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae

52% id,
99% cov

More...

SM_b20489: carbohydrate kinase
is similar to:
PaperBLAST

HSERO_RS22200: Rhamnulokinase (EC 2.7.1.5) from Herbaspirillum seropedicae

39% id,
97% cov

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae

33% id,
98% cov

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti

32% id,
97% cov

More...

SMc02334: pentose kinase transmembrane protein
is similar to:
PaperBLAST

rhaK / Q7BSH0: rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum

26% id,
70% cov

SMc02341: sugar kinase
is similar to:
PaperBLAST

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae

27% id,
65% cov

SM_b21022: autoinducer-2 (AI-2) kinase
is similar to:
PaperBLAST

BWI76_RS00680: Rhamnulokinase (EC 2.7.1.5) from Klebsiella michiganensis

26% id,
58% cov

RHAB_ECOUT / Q1R415: Rhamnulokinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli

24% id,
52% cov

RHAB_ECOLI / P32171: L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli
RhaB / b3904: rhamnulokinase (EC 2.7.1.5) from Escherichia coli
rhaB / P32171: rhamnulokinase (EC 2.7.1.5) from Escherichia coli

23% id,
52% cov

SMc01623: erythritol kinase
is similar to:
PaperBLAST

RHAB_ECOLI / P32171: L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli
RhaB / b3904: rhamnulokinase (EC 2.7.1.5) from Escherichia coli
rhaB / P32171: rhamnulokinase (EC 2.7.1.5) from Escherichia coli

23% id,
58% cov

RHAB_ECOUT / Q1R415: Rhamnulokinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli

23% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory